FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944448

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944448
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494059
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31230.6321107398104274No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG11200.2266935730347995No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7800.15787588122066393No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7450.15079170706332645No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7320.14816044237631537No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6700.13561133386903185No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6130.12407425024136794No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5850.11840691091549793No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5540.11213235666185618No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5320.10767944719152975No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5320.10767944719152975No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5120.1036313476730512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)