FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944453

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944453
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430063
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT13650.31739535835447363No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG12810.29786333630189066No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12540.29158518635641756No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG12080.2808890790419078No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11110.25833424405261557No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG9740.2264784461811409No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7990.18578673357159298No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7460.17346295775270135No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG7390.17183528924831942No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT7310.16997509667188296No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6490.1509081227634091No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6400.14881540611491806No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5880.13672415436808094No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA5800.13486396179164448No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5760.13393386550342623No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5220.12137756561248003No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5110.11881980081987988No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5020.11672708417138884No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC4970.11556446381111604No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4690.10905378979358837No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4540.10556592871276999No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4400.10231059170400615No Hit
GGAGGTGTGAGACCAGGAACCGCTAACCGGGTTCGTCTGGTTGA4400.10231059170400615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)