FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944454

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944454
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430063
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62511.4535079744130512No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28420.6608334127790579No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17070.396918590997133No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA13610.3164652620662554No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA12760.29670071594161784No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC11890.2764711216728712No Hit
TCCTACACCAACGGCAAACTGACTATCACCC9780.22740854246935915No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7520.1748581021850287No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG7280.16927752445571928No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC7120.16555713930284632No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7010.16299937451024615No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6910.16067413378970058No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6740.15672122456477305No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6400.14881540611491806No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5870.1364916302960264No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5840.13579405807986272No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5770.1341663895754808No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5700.1325387210710989No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5640.13114357663877155No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5080.11812222860371621No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4970.11556446381111604No Hit
TCTATCGTAGTGACCGGCAACGCAGGTTCCG4790.11137903051413399No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4640.10789116943331557No Hit
CAACAGGATCTGAGCAACCCGACCGCCTCTA4540.10556592871276999No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4480.10417078428044263No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)