FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007944456

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944456
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428230
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG67741.5818602153048595No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16340.38157065128552414No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16010.37386451206127547No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15320.35775167550148285No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14820.346075706979894No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13640.31852042126894425No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12420.29003105807626745No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11800.27555285710949723No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10420.243327183989912No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10230.23889031595170818No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10150.237022160988254No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9550.22301099876234737No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8500.19849146486701072No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8320.19428811619923872No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7580.1770076827872872No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6780.15832613315274502No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6280.14665016463115615No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6270.14641664526072437No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6250.14594960651986083No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5970.13941106414777107No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5850.13660883170258975No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5440.12703453751488686No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5230.12213063073581955No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5040.11769376269761576No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4850.113256894659412No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4830.11278985591854844No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4790.11185577843682135No Hit
GCAGCGGGTCGCCTGCCGGGCTATGGCGTCA4730.11045466221423067No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4670.10905354599164No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4630.10811946850991291No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4490.10485019732386801No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4450.10391611984214091No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4430.10344908110127736No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4420.10321556173084558No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT4390.10251500361955024No Hit
GAAATGGAAGGCGGCCTGGAACCGGGCGTTT4380.10228148424911845No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)