FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407029
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG18580.4564785310137607No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC17530.43068184330846204No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG17430.42822501590795736No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16800.4127470032847782No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15210.3736834476167546No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14740.3621363588343828No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12420.30513796314267533No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG11830.290642681479698No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11820.2903969987396475No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11500.28253515105803273No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10090.2478938847109174No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9980.2451913745703623No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9800.24076908524945398No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG9330.2292219964670822No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG9060.22258856248571968No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8660.21276125288370115No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8140.19998575040107708No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7980.19605482656026965No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7570.18598183421820066No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT7300.17934840023683818No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7130.1751717936559803No Hit
CGCCAAATTTAAATGGCCGCCTCATTTACGGCTGGCAGCGGAGG6730.16534448405396174No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6670.16387038761365896No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6620.16264197391340668No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG6420.1577283191123974No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5810.14274167196931914No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5740.1410218927889659No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5470.1343884588076034No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA5430.13340572784740154No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5410.13291436236730061No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5370.13193163140709877No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5200.12775502482624088No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5070.12456114920558485No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5010.12308705276528208No Hit
TTTACGGGATGCTGCGGAGGTAGGCGCCACAGCCGGGTCCGGTT4920.12087590810482791No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4860.11940181166452513No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4780.11743634974412141No Hit
GCAGCGCTCGTACAGGCCGTCCAGGCCCTGGGTAGTGGTTTCGC4750.11669930152397004No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4740.11645361878391956No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4600.11301406042321309No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4110.1009756061607404No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)