FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436381
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG67221.5403970383678482No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43020.9858357719515743No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23150.5304997238651545No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20250.464044034914444No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13050.29905060027819724No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11810.2706350643130659No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11530.2642186529661007No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11230.25734392652292376No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10570.24221952834793448No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9480.21724135560439156No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7350.16843079785783524No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7330.16797248276162344No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7250.16613922237677625No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6830.15651460535632852No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6200.14207767982565694No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5570.12764075429498534No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5490.12580749391013815No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5290.12122434294802019No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5020.11503708914916094No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4940.11320382876431376No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4880.11182888347567838No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC4770.10930815044651349No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4700.1077040476097722No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4630.10609994477303089No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4570.10472499948439551No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4440.10174595135901884No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)