FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007944464

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944464
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515490
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31460.6102931191681701No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31230.6058313449339463No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12270.23802595588663214No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11910.2310423092591515No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10190.19767599759452173No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC8130.15771401967060467No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6790.13171933500164892No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6060.11755805156259093No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5860.11367824788065724No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5770.11193233622378708No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5430.1053366699644998No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)