FastQCFastQC Report
Wed 31 May 2023
EGAF00007944465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471563
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15800.3350559734330302No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13870.2941282500959575No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11910.2525643445308474No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11870.2517161015601309No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11020.2336909384324046No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9910.21015219599502083No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7530.15968173923738715No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7100.15056312730218444No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7020.14886664136075137No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6700.14208069759501912No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6550.13889978645483214No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6030.1278726278355172No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5990.12702438486480067No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5110.10836303950903696No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4950.10497006762617085No Hit
CAGGCCGGTGCGCAGGTTGGTGAATTTAGCAATCGGCAGGCCAC4910.1041218246554543No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4860.10306152094205864No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4810.10200121722866298No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4720.10009267054455079No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)