FastQCFastQC Report
Wed 31 May 2023
EGAF00007944466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471563
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66361.4072350884187266No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35330.749210603885377No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22770.4828623110803859No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12070.25595731641371355No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12030.255109073442997No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10810.2292376628361428No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9690.2054868596560799No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9600.2035783129719677No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8100.17176920157009776No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7620.16159028592149938No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6900.1463219124486018No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6840.14504954799252698No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6520.1382636042267947No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5350.11345249733333616No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC5270.1117560113919031No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5220.11069570767850744No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5160.10942334322243265No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4750.10072885277258817No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4730.10030473128722991No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)