FastQCFastQC Report
Wed 31 May 2023
EGAF00007944467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502454
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT27740.5520903406082944No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC24390.4854175705636735No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC22570.4491953492259988No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21100.41993893968403073No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18460.3673968164249862No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17380.345902311455377No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16100.3204273426025069No Hit
CAGGCCGGTGCGCAGGTTGGTGAATTTAGCAATCGGCAGGCCAC15690.31226739164182193No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG15540.30928204372937623No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15310.30470451026362616No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC13590.2704725208675819No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11250.22390109343342876No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10790.21474602650192856No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10200.2030036580463087No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9950.1980280781922325No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8900.1771306428051125No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8390.16698045990279706No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG7800.15523809144717726No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7750.154242975476362No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6910.137525027166666No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6620.13175335453593762No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT6300.12538461232272008No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5620.11185103511963283No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5550.1104578727604915No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5550.1104578727604915No Hit
CGGAGCCTGAGTGGTGGTGGTGGAGCGGTCAGATTCAACGTTAG5140.10229792179980655No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT5060.10070573624650217No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)