FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494315
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30860.6242982713451949No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8500.17195512982612302No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6010.1215823917947058No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5660.11450188644892426No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5020.10155467667378089No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)