FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007944472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428317
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT85491.9959515965978467No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57261.3368603160743093No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17040.39783618208009486No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC13880.32405904972251864No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9510.22203181288625012No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8230.19214740484267495No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8020.18724449414802588No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7970.18607713445882373No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7720.18024033601281292No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7230.16880021105863183No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6400.14942204021787603No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4860.11346736179044958No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4370.10202723683626845No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)