FastQCFastQC Report
Sun 21 May 2023
EGAF00007944473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460187
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT16340.3550730463920102No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14250.3096567265046601No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14230.3092221205727237No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12630.27445364601781447No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT12280.2668480422089281No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11100.24120629222468257No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10890.23664292993935077No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10850.235773718075478No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC9560.20774163546558247No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT9200.1999187286907279No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG8920.19383424564361879No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8390.18231718844730513No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7190.1562408325311232No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7130.15493701473531413No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7100.15428510583740956No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6860.1490698346541732No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6590.14320265457303225No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6510.1414642308452868No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6460.14037771601544588No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT5800.12603572026154583No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5670.12321078170395947No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5470.11886472238459582No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5450.11843011645265947No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5150.11191102747361399No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT5080.11038990671183671No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4940.10734766518828215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)