FastQCFastQC Report
Sun 21 May 2023
EGAF00007944474

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944474
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460187
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62581.3598819610288861No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30680.6666854995903839No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28000.608448304710911No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15500.33681959725068283No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14890.32356411632662374No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT14770.32095648073500554No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT12500.27162870746022816No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11120.24164089815661896No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA10100.21947599562786432No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC9810.21317420961478703No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA9210.20013603165669608No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8700.1890535803923188No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7920.17210394904680054No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7890.17145204014889598No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7440.16167340668032779No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA7260.1577619532929005No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6980.1516774702457914No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6910.1501563494840141No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6700.14559298719868227No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6620.14385456347093684No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6030.13103368847881403No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6010.1305990825468777No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT5930.12886065881913222No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5510.11973393424846855No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5470.11886472238459582No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5160.11212833043958217No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC4750.10321890883488669No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)