FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007944475

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944475
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504699
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17550.3477320145274708No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG12790.25341837412002005No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10760.21319638041684252No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10700.2120075530167486No Hit
GGCAATGCCGGCGCGCCAACGACCATCACGCGCTTTGTCAGTGA10430.20665782971632596No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8900.17634273101393108No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8760.17356880041371195No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8180.16207680221280407No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7780.15415128621217794No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7740.15335873461211533No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7140.14147046061117616No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6910.13691328891081617No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6630.13136542771037787No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC6270.12423246330981437No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG5770.11432556830903173No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5740.11373115460898477No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5260.10422053540823342No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5170.10243729430809254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)