FastQCFastQC Report
Wed 31 May 2023
EGAF00007944477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464159
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15680.33781527450722704No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG11320.24388194562639096No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9920.21371986754538855No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9770.21048821632242398No Hit
GGCAATGCCGGCGCGCCAACGACCATCACGCGCTTTGTCAGTGA9350.20143959289812327No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8950.19282185630355114No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8510.18334234604952182No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7730.1665377596901062No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7200.15511925870229812No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7090.1527493811387908No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6580.14176176698071136No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC6390.1376683420982896No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6220.13400580404559645No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5860.12624984111048154No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG5580.12021742549428106No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5380.115908557196995No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5030.1083680376767444No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4780.10298195230513682No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)