FastQCFastQC Report
Sun 21 May 2023
EGAF00007944480

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944480
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495585
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG67841.3688872746350274No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12870.2596930899845637No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11150.22498663196020863No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10670.21530110879062117No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10580.21348507319632354No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10210.2060191490864332No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9520.19209620953015125No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9470.19108730086665254No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9280.1872534479453575No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8110.1636449852194881No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8060.16263607655598938No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6830.13781692343392152No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6010.12127082135254295No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6000.12106903961984321No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5620.11340133377725314No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5410.10916391739055863No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)