FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007944482

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944482
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499480
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31660.6338592135821254No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14740.2951069111876351No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10330.20681508769119883No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9060.18138864418995757No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8660.17338031552814925No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8080.16176823896852727No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7690.1539601185232642No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7340.14695283094418196No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7310.14635220629454634No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7020.14054616801473532No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5950.11912388884439816No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5640.11291743413149676No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5460.10931368623368304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)