FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944484

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944484
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502551
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31390.6246132233345472No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21300.42383758066345506No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11760.2340061008733442No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11090.2206741206365125No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10430.207541125179335No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8830.17570356043466237No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6720.13371777192762527No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6330.1259573655211113No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6260.12456447206353186No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6050.12038579169079357No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5840.11620711131805528No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5710.11362030918255063No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5100.10148223762364417No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)