FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474778
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68661.446149568851126No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15260.32141337635695No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10990.23147660590844563No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8640.1819797884484959No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8510.17924166663156252No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8350.17587167054918298No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8250.17376542299769576No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8240.17355479824254705No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8210.17292292397710088No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8170.172080424956506No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7560.15923231489243392No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7090.149332951400444No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5970.12574297882378713No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5630.11858173714873056No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5570.11731798861783824No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5340.11247361924941762No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5090.10720800037069957No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4980.10489112806406362No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4930.10383800428832002No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4870.10257425575742768No Hit

[OK]Adapter Content

Adapter graph