FastQCFastQC Report
Wed 31 May 2023
EGAF00007944490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496801
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30500.6139279107731265No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20040.40338083055388374No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14340.2886467619831683No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA13370.26912184154218693No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13050.26268063067505903No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13010.26187547931666805No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12500.251609799497183No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG12420.24999949678040098No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11220.2258449560286714No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9570.1926324624950433No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9500.19122344761785906No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9230.1857886759487199No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9050.18216549483596048No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8780.1767307231668213No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8100.16304315007417458No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8100.16304315007417458No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6560.13204482277612162No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6560.13204482277612162No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6420.1292267930217532No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5340.10748770634519655No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5040.10144907115726418No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5000.1006439197988732No Hit

[OK]Adapter Content

Adapter graph