FastQCFastQC Report
Sun 21 May 2023
EGAF00007944492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461091
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29360.63675066310121No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19250.417488088034683No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17350.37628147155333763No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13560.2940851155194961No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9680.20993686712601198No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8330.18065848173137192No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7780.16873025064466665No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6860.14877757319054155No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6470.14031937296542332No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6310.13684934210383634No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5540.12014981858244903No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG5110.11082411064193402No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5030.10908909521114053No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4680.10149840270141902No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4660.10106464884372066No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)