FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457973
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14890.3251283372600568No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12220.2668279571066417No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12070.26355265485083185No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11520.2515432132461957No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9710.212021232692757No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8420.18385363329279236No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8070.1762112613625694No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7030.1535024990556212No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6860.14979048983237003No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6260.13668928080913068No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5510.12031276953008148No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5250.11463557895334442No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4980.1087400348928867No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4620.1008793094789431No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)