FastQCFastQC Report
Wed 31 May 2023
EGAF00007944496

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944496
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467953
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28910.6177970864595376No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11910.2545127395272602No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6740.1440315587249147No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC6650.14210828865292027No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6170.1318508482689501No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)