FastQCFastQC Report
Wed 31 May 2023
EGAF00007944498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458730
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46471.0130141913543915No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27070.5901074706254223No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15320.3339655134828766No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10150.22126305234015653No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10100.22017308656508186No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9950.21690318923985788No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9000.1961938395134393No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8840.19270594903320035No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7730.16850870882654284No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7230.15760905107579623No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6370.13886163974451202No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5920.12905194776884005No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5380.11728031739803371No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)