FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944500

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944500
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418057
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55901.3371382371303435No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43981.0520096541859125No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13540.32387927961976476No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9580.2291553544133934No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9370.22413211595547974No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8690.20786639142509278No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8580.20523517128047133No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8470.2026039511358499No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7220.17270372221969732No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6240.1492619427494337No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6030.14423870429152005No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5230.12510255778518242No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5020.12007931932726877No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)