FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944505

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501970
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19270.38388748331573597No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG17820.3550012948981015No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17250.3436460346235831No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12530.24961651094686935No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11220.22351933382473055No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11200.22312090363965975No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG8130.16196187023128872No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7880.15698149291790345No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7680.15299719106719525No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5980.11913062533617545No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT5910.1177361196884276No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5420.10797458015419248No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC5280.10518556885869673No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG5220.10399027830348428No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)