FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944506

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944506
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501970
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42490.8464649281829593No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG18440.36735263063529694No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13020.25937805048110446No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12710.2532023826125067No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12150.24204633743052373No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11330.22571069984262007No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8630.17192262485805923No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG8380.166942247544674No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8140.16216108532382412No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7570.15080582504930573No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7550.15040739486423493No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA5980.11913062533617545No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5800.11554475367053808No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC5600.11156045181982988No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5130.10219734247066557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)