FastQCFastQC Report
Wed 31 May 2023
EGAF00007944507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550809
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10350.18790542638192187No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10040.18227734114729424No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9780.1775570115956711No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8150.14796417632972592No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6770.122910119478803No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6480.11764513651737717No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6410.11637427856117093No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6230.1131063581023549No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5750.10439190354551214No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5700.1034841478625077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)