FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944508

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944508
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550809
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20860.37871567094945796No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13960.2534453866948434No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13300.24146301167918463No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10820.19643832980216375No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10620.19280730707014593No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6850.12436252857161013No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6810.12363632402520655No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6690.12145771038599587No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6660.1209130569761932No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5840.10602586377492017No Hit
ATGGAATCTTCTGCCAAACGTAAAATGGATC5780.10493655695531481No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5730.10402880127231037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)