FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944512

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944512
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472506
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46790.9902519756362882No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10980.23237800154918667No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9030.1911086843341672No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9000.1904737717616284No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7100.15026264216750687No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6450.1365062030958337No Hit
ATCAAAAAGCTGATTCGCGCCTGGTTCAAAG5780.12232648897580137No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5700.12063338878236465No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5250.11110970019428325No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5250.11110970019428325No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4920.10412566189635687No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG4900.1037023868479977No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)