FastQCFastQC Report
Sun 21 May 2023
EGAF00007944518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492970
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49150.9970180741221576No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34110.691928514919772No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21350.43308923463902466No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18650.3783191674949794No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16750.3397772683936142No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13190.2675619206036879No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12880.26127350548714934No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10340.20974907195164005No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9560.193926608110027No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9230.18723248879242144No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7780.1578189342150638No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7340.14889344179158975No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6980.1415907661723837No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6870.1393593930665152No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6460.13104245694464167No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6320.12820252753717265No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6210.12597115443130413No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6170.12515974602917013No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6160.12495689392863663No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5490.11136580319289206No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA5220.10588879647848753No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5120.10386027547315253No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)