FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543498
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18760.3451714633724503No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14840.2730460829662667No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12030.2213439607873442No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11680.21490419467964922No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9990.18380932404535066No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG9830.18086543096754726No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7890.14517072739918085No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7270.13376314172269263No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7020.12916330878862478No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT6740.12401149590246882No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6280.115547803303784No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5860.10782008397455005No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5660.10414021762729576No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5490.10101233123212966No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)