FastQCFastQC Report
Wed 31 May 2023
EGAF00007944520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543498
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG52550.9668848827410589No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19650.36154686861773183No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18220.3352358242348638No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13650.2511508782001038No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11860.21821607439217808No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG10780.19834479611700503No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10560.19429694313502532No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9230.16982583192578446No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8200.15087452023742498No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8080.14866660042907243No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7500.13799498802203505No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7420.13652304148313335No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7060.12989928205807563No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6480.11922766965103827No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6200.11407585676488231No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6180.11370787013015689No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5660.10414021762729576No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)