FastQCFastQC Report
Sun 21 May 2023
EGAF00007944522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526450
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19340.3673663215879951No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12930.24560737012061926No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12000.2279418748219204No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG10670.2026783170291576No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9060.1720961154905499No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC9040.17171621236584672No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC7400.14056415614018425No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6390.12137904834267262No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6030.114540792098015No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6000.1139709374109602No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5400.10257384366986419No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)