FastQCFastQC Report
Sun 21 May 2023
EGAF00007944523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479782
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14550.30326273182403674No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11050.23031293379076329No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11040.23010450579638253No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9550.1990487346336461No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8870.184875631015753No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8670.18070707112813736No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8080.16840981945967126No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT7550.15736313575748986No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA7370.1536114318586358No Hit
CAGGTTGGCCGGGTGCAGCGGGTGCGCCGGGTCGGTCACCGGAT6700.13964675623512346No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6670.1390214722519811No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6070.12651579258913423No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5200.10838255707800626No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)