FastQCFastQC Report
Sun 21 May 2023
EGAF00007944524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479782
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47150.9827379935053837No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27650.5763034044628602No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23720.49439120267121317No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12240.2551158651220763No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10770.22447694994810144No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA10090.21030384633020832No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG9570.19946559062240768No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8910.1857093429932761No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8760.1825829230775644No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6900.14381531612273907No Hit
GTCCCGGCGTTCTCCCGCGGTCGTTGCTGTA6530.13610348033065017No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4840.10087914928029813No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4820.10046229329153658No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)