FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511348
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29690.5806221985810055No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17740.3469261637866971No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17350.3392992639063808No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17160.33558359473391897No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13250.2591190343953628No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12340.2413229346746247No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11950.2336960347943084No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11260.22020228885221024No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10510.20553517369775576No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9850.19262811236183577No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9240.18069885870287947No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9180.17952548949052308No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8750.17111634346863586No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8360.1634894435883195No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7710.15077794378779227No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7620.14901788996925774No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7580.1482356438276868No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7280.14236879776590503No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7170.14021762087658504No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6990.13669751323951593No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6950.13591526709794505No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6940.1357197055625523No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6560.12828836721762868No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6290.12300820576202508No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6210.12144371347888328No Hit
TTCCTGGAAGGCGAAGCAAGCCCGCCGCTGG6110.119488098124956No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6100.11929253658956326No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5850.11440349820474512No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5820.11381681359856693No Hit
GTCGCGGGTAAACGTGAAGGTCTGGGCGGTC5490.10736328293060694No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5280.10325649068735968No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5260.10286536761657424No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)