FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944529

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944529
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479426
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14240.2970218553019653No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT13480.2811695652718042No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC13020.2715747581482857No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11570.24133025743284675No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10000.2085827635547509No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT9580.19982228748545136No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9020.1881416527263853No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8760.18271850087396177No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT8580.17896401112997626No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT8130.16957778677001248No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG7650.15956581411938445No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6960.14517360343410662No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6670.13912470329101884No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6520.13599596183769758No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6220.12973847893105506No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6220.12973847893105506No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6210.1295298961675003No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT5950.12410674431507678No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5840.12181233391597451No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5730.11951792351687227No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5700.118892175226208No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5550.11576343377288675No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5540.115554851009332No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5420.11305185784667499No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG5380.11221752679245597No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5380.11221752679245597No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5150.10742012323069672No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG5130.10700295770358721No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT4950.1032484679596017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)