FastQCFastQC Report
Sun 21 May 2023
EGAF00007944530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479426
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49021.0224727069453887No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14600.3045308347899363No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14570.30390508649927206No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13780.2874270481784467No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC13080.27282625472961414No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10220.2131715843529554No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10220.2131715843529554No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9880.2060797703920939No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9840.2052454393378749No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8800.18355283192818078No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8720.18188416981974276No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8060.16811770742512921No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC7960.16603187978958173No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG7360.15351691397629666No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7180.14976242423231115No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6920.1443392723798876No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6780.1414191136901211No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6660.1389161205274641No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6590.13745604118258084No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6520.13599596183769758No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6300.13140714103949308No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6290.13119855827593832No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6030.12577540642351479No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5950.12410674431507678No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5870.12243808220663878No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5810.12118658562531026No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5770.12035225457109128No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5710.11910075798976276No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5660.11805784417198902No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5640.11764067864487951No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5520.11513768548222249No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5450.11367760613733924No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5080.10596004388581344No Hit
GGCCGCCCTTCCCTGAAACTGCAGGCTGCCC5050.1053342955951492No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC4970.10366563348671118No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC4920.10262271966893745No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4920.10262271966893745No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4910.10241413690538269No Hit
CACCAGCCGATGCGTGAACGTGCACAGTCTA4900.10220555414182794No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4840.10095405756049944No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4800.10011972650628043No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)