FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504427
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT55121.0927250127372246No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17350.3439546257436656No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15490.3070811039060162No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG13130.2602953450152351No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC12480.24740943684616407No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11670.23135161282009092No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11650.23095512333796567No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11290.22381831265971092No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10570.20954469130320144No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10040.199037720026882No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9800.19427984624137884No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9200.18238516177762093No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7890.15641510069841624No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7620.1510624926897252No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6540.129652060654961No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5360.10625918120957045No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5240.10388024431681889No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5100.10110481794194204No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)