FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944533

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944533
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509767
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT28990.5686911863655356No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC25000.49042013311964094No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21130.4145030965127205No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18670.3662457554137479No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17720.3476097903552015No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17330.33995923627853514No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14540.2852283494223832No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13610.26698472047033256No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12610.24736791514554687No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12020.23579400000392337No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC10550.20695729617648848No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10090.1979335657270871No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9720.19067534775691639No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8940.17537423960358361No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8670.17007770216589146No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8510.16693901331392577No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC8480.1663505091541822No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8440.16556583694119076No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC8340.16360415640871223No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC8060.15811145091777223No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7940.15575743427879796No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7820.15340341763982368No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7450.146145199669653No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7290.14300651081768728No Hit
CGCCGCACGCAGGCTTTCGGCGTCTGGAACGCCGGCAGATGCCT6990.1371214692202516No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6630.13005941930332876No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC6410.12574372213187593No Hit
TTCCTGGCCCTCTTCGCCTTCATCACCATCGCCACCTTCGTCGC6140.12044718469418382No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5940.11652382362922668No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5810.11397363893700455No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5670.11122728619153456No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5630.11044261397854314No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)