FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944534

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509767
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38510.7554431730574949No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32960.6465699035049346No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG30460.5975278901929705No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21500.4217613144828912No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20050.39331694676195206No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19500.3825277038333199No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG16080.315438229622553No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13460.2640421996716147No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13420.26325752745862324No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13220.25933416639366613No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12420.24364072213383764No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT11110.21794270715836842No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10460.20519178369725774No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9760.19146001996990783No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9560.1875366589049507No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8890.17439339933734432No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8810.17282405491136146No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8770.17203938269837005No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8630.16929302995290005No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC8630.16929302995290005No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT8550.16772368552691722No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC8420.16517350083469506No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8240.16164247587623365No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8120.15928845923725937No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7900.15497276206580654No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7870.15438425790606297No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7430.14575286356315728No Hit
CATGGTGAAGGCTTCCTGAGCGAGGGTAAAG7100.13927931780597802No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7020.13770997337999516No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG6960.13653296506050805No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6670.1308440915163202No Hit
GCTCCGACCTGCAACATCCGTGTTACCGTTT6350.12456671381238879No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5910.11593531946948311No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5790.11358130283050884No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5470.10730392512657742No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5240.10279205990187675No Hit
CAGGAAGAAACCGTCACTCTGCACTGCGAGG5180.10161505158238959No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)