FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944537

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944537
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464383
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23700.5103545995439109No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17580.37856682953510357No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG17510.37705945308075445No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17450.3757674161198838No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17000.36607713891335386No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15490.33356087539810886No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT13650.2939384085980753No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12920.2782186255741489No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11810.2543159417980417No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11760.2532392443306495No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9790.21081736411539612No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9690.2086639691806117No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG9620.2071565927262626No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8490.18282322996319847No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7940.1709795578218841No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7460.1606432621349188No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5860.12618894317836785No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5860.12618894317836785No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5600.12059011634792832No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5400.11628332647835946No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5180.11154585762183371No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5130.11046916015444148No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5100.10982314167400616No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4980.10723906775226483No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4750.10228625940226063No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT4690.10099422244138997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)