FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007944538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464383
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30020.6464491594222872No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20300.4371391717612401No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18400.3962246680003359No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17950.38653439079380597No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG17210.37059926827640116No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16900.3639237439785694No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13480.29027763720894173No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC12890.2775726070937136No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12860.27692658861327824No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12810.27584989114588604No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10910.2349353873849818No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10660.22955190004802073No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG10510.22632180764584406No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9940.21404745651757276No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9780.21060202462191766No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9080.19552826007842666No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8240.1774397426262374No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8010.17248693427623318No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7840.16882616288709967No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7430.15999724365448348No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6580.1416933867088158No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6200.13351048595663492No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5890.1268349616588032No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5780.12446622723054032No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5690.12252817178923432No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5680.12231283229575587No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5430.11692934495879478No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5100.10982314167400616No Hit
AACGTAACCACCAACCAGGACGGCACCGTCT5030.10831576521965705No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5020.1081004257261786No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4970.10702372825878638No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC4930.1061623702848726No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4690.10099422244138997No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4670.10056354345443308No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4650.1001328644674762No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)