FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944546

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944546
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405941
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34010.8378064792666914No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG14740.3631069539662168No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11940.29413141318566No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9990.24609487585634365No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7710.18992907836360456No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6700.16504861543918942No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6650.16381690935382234No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6120.15076082484893125No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5780.14238522346843507No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4910.12095353758304779No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4730.11651939567572628No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4300.10592672334156934No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4290.10568038212449592No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4230.10420233482205542No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4110.10124624021717443No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4090.10075355778302758No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)