FastQCFastQC Report
Wed 31 May 2023
EGAF00007944549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413908
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13460.32519303806643024No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12850.310455463532959No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10410.2515051653990742No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG9170.22154681716709995No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8980.21695642509929744No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8970.2167148255167815No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG8600.20777564096369242No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8100.19569566183789636No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7740.18699807686732317No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7170.17322690066391566No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT6100.14737574533471207No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5950.14375175159697323No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT5280.1275645795684065No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5100.12321578708311992No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4990.12055819167544478No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG4980.12031659209292887No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4890.11814219585028557No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4680.11306860461745122No Hit
CGGTTTACCTTTACGGGAAGAAGATTGTGCGTGCTTGCGCAGTT4540.10968621046222832No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4430.10702861505455319No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4330.10461261922939398No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4330.10461261922939398No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG4240.10243822298675069No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)