FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422442
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43421.0278334067161883No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7670.18156338621633264No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC6460.1529204009071068No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4870.11528209789746285No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4770.11291490902893178No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4520.10699693685760413No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4430.10486646687592617No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)