FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007944557

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944557
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437051
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6520.14918167444989258No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5610.12836030577667137No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5280.12080969955451423No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4550.10410684336610602No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)