FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007944564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences394358
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA31310.7939486456468489No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28660.7267508203206224No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17040.43209469568260317No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16250.41206213643440726No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16190.41054067623834184No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15250.38670446649998225No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9810.2487587420567099No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9290.23557275369080885No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8800.22314749542294057No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7570.19195756140359774No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7550.19145040800490923No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7450.18891464101146674No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6800.17243215555409044No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6720.17040354195933644No Hit
GAACCGATCTACGCTACCATCGACGACCTGG6100.1546817865999929No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5770.14631375552163262No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5640.14301725843015736No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5030.12754907977015809No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4790.12146323898589606No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4660.11816674189442081No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4560.11563097490097829No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4300.10903798071802777No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4020.10193783313638875No Hit
TTCAACAACAACAAATCCCGCTTCAAAGAAG4010.10168425643704451No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)